Bioinformatics Tutorial - Basics
Preface
Getting Started
Part I. Basic Tools
1.Linux
1.1 Basic Command
1.2 Practice Guide
2.Blast
3.Conservation Analysis
4.Function Analysis
4.1 GO
4.2 KEGG
4.3 GSEA
Part II. NGS Pipelines
5.Mapping
6.RNA-seq
6.1 Differential Expression
6.2 Alternative Splicing
7.ChIP-seq
Part III. Machine Learning Basics
8.Machine Learning Basics
Part IV. Quiz
A. eMaize
B. exRNA
Appendix
Appendix I. Keep Learning
Self Learning
Advanced Tutorial
Shared Scripts
Appendix II. Databases & Servers
Appendix III. Docker
Appendix IV. Python Basics
Appendix V. R Basics
Appendix. Plot with R
0.Prepare
1.Box plots
2.Violin plots
3.Histogram plots
4.Density plots
5.Dot plots
6.Scatter plots
7.Volcano plots
8.Manhattan plots
9.Heatmaps
10.Ballon plots
11.Vennpie plots
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6.Scatter plots
6.Scatter plots
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