Information for 1-AAAAAGAA (Motif 1)

C G T A C T G A C G T A C G T A C G T A A C T G C G T A C G T A
Reverse Opposite:
A C G T A C G T G T A C A C G T A C G T A C G T A G C T A C G T
p-value:1e-9
log p-value:-2.280e+01
Information Content per bp:1.928
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif57.14%
Number of Background Sequences with motif4829.1
Percentage of Background Sequences with motif14.26%
Average Position of motif in Targets115.6 +/- 53.2bp
Average Position of motif in Background100.4 +/- 77.7bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.29
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

AZF1/MA0277.1/Jaspar

Match Rank:1
Score:0.90
Offset:0
Orientation:forward strand
Alignment:AAAAAGAA-
AAAAAGAAA
 C G T A C T G A C G T A C G T A C G T A A C T G C G T A C G T A A C G T
C G T A C G T A C G T A G T C A C T G A A C T G G T C A C G T A C G T A

RLR1?/SacCer-Promoters/Homer

Match Rank:2
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-AAAAAGAA---
AAAARRGAAAAW
 A C G T C G T A C T G A C G T A C G T A C G T A A C T G C G T A C G T A A C G T A C G T A C G T
C T G A C G T A C G T A T C G A C T G A C T G A C T A G C T G A C G T A G T C A C G T A C G A T

HCM1/MA0317.1/Jaspar

Match Rank:3
Score:0.70
Offset:0
Orientation:forward strand
Alignment:AAAAAGAA
ATAAACAA
 C G T A C T G A C G T A C G T A C G T A A C T G C G T A C G T A
T C G A G C A T G T C A G T C A C G T A G A T C C G T A G T C A

SUM1/MA0398.1/Jaspar

Match Rank:4
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:AAAAAGAA-
AAAAATTTT
 C G T A C T G A C G T A C G T A C G T A A C T G C G T A C G T A A C G T
C G T A C G T A C G T A C G T A C G T A A C G T C G A T C G A T C G A T

SPT23/MA0388.1/Jaspar

Match Rank:5
Score:0.67
Offset:0
Orientation:forward strand
Alignment:AAAAAGAA
GAAATCAA
 C G T A C T G A C G T A C G T A C G T A A C T G C G T A C G T A
C T A G C G T A C T G A C G T A G A C T A T G C T G C A C T G A

SPT23/SPT23_YPD/[](Harbison)/Yeast

Match Rank:6
Score:0.67
Offset:0
Orientation:forward strand
Alignment:AAAAAGAA
GAAATCAA
 C G T A C T G A C G T A C G T A C G T A A C T G C G T A C G T A
C T A G C T G A C T G A C G T A G A C T A T G C T G C A C T G A

SPT23(MacIsaac)/Yeast

Match Rank:7
Score:0.67
Offset:0
Orientation:forward strand
Alignment:AAAAAGAA
GAAATCAA
 C G T A C T G A C G T A C G T A C G T A A C T G C G T A C G T A
C T A G C T G A C T G A C G T A G A C T A T G C T G C A C T G A

RGT1(MacIsaac)/Yeast

Match Rank:8
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----AAAAAGAA
GCCGGAAAAA---
 A C G T A C G T A C G T A C G T A C G T C G T A C T G A C G T A C G T A C G T A A C T G C G T A C G T A
A T C G A G T C A G T C A C T G A C T G C G T A C G T A C G T A C G T A C G T A A C G T A C G T A C G T

MF0005.1_Forkhead_class/Jaspar

Match Rank:9
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--AAAAAGAA
AAATAAACA-
 A C G T A C G T C G T A C T G A C G T A C G T A C G T A A C T G C G T A C G T A
T C G A G T C A T C G A G A C T G T C A C T G A T C G A G A T C C G T A A C G T

RLM1(MacIsaac)/Yeast

Match Rank:10
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---AAAAAGAA
TCTATAAATA-
 A C G T A C G T A C G T C G T A C T G A C G T A C G T A C G T A A C T G C G T A C G T A
G A C T T A G C A G C T G C T A G C A T G T C A G T C A C G T A G C A T C T G A A C G T